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SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny.
Comput Appl Biosci. 1996 Dec; 12(6):543-8.CA

Abstract

SEAVIEW and PHYLO_WIN are two graphic tools for X Windows-Unix computers dedicated to sequence alignment and molecular phylogenetics. SEAVIEW is a sequence alignment editor allowing manual or automatic alignment through an interface with CLUSTALW program. Alignment of large sequences with extensive length differences is made easier by a dot-plot-based routine. The PHYLO_WIN program allows phylogenetic tree building according to most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap analysis with any of them. Reconstructed trees can be drawn, edited, printed, stored, evaluated according to numerous criteria. Taxonomic species groups and sets of conserved regions can be defined by mouse and stored into sequence files, thus avoiding multiple data files. Both tools are entirely mouse driven. On-line help makes them easy to use. They are freely available by anonymous ftp at biom3.univ-lyon1.fr/pub/ mol_phylogeny or http:@acnuc.univ-lyon1.fr/, or by e-mail to galtier@biomserv.univ-lyon1.fr.

Authors+Show Affiliations

CNRS UMR 5558, Biométrie, Génétique et Biologie des Populations, Université Claude Bernard Lyon, Villeurbanne, France. galtier@biomserv.univ-lyon1.frNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

9021275

Citation

Galtier, N, et al. "SEAVIEW and PHYLO_WIN: Two Graphic Tools for Sequence Alignment and Molecular Phylogeny." Computer Applications in the Biosciences : CABIOS, vol. 12, no. 6, 1996, pp. 543-8.
Galtier N, Gouy M, Gautier C. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci. 1996;12(6):543-8.
Galtier, N., Gouy, M., & Gautier, C. (1996). SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Computer Applications in the Biosciences : CABIOS, 12(6), 543-8.
Galtier N, Gouy M, Gautier C. SEAVIEW and PHYLO_WIN: Two Graphic Tools for Sequence Alignment and Molecular Phylogeny. Comput Appl Biosci. 1996;12(6):543-8. PubMed PMID: 9021275.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. AU - Galtier,N, AU - Gouy,M, AU - Gautier,C, PY - 1996/12/1/pubmed PY - 1996/12/1/medline PY - 1996/12/1/entrez SP - 543 EP - 8 JF - Computer applications in the biosciences : CABIOS JO - Comput Appl Biosci VL - 12 IS - 6 N2 - SEAVIEW and PHYLO_WIN are two graphic tools for X Windows-Unix computers dedicated to sequence alignment and molecular phylogenetics. SEAVIEW is a sequence alignment editor allowing manual or automatic alignment through an interface with CLUSTALW program. Alignment of large sequences with extensive length differences is made easier by a dot-plot-based routine. The PHYLO_WIN program allows phylogenetic tree building according to most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap analysis with any of them. Reconstructed trees can be drawn, edited, printed, stored, evaluated according to numerous criteria. Taxonomic species groups and sets of conserved regions can be defined by mouse and stored into sequence files, thus avoiding multiple data files. Both tools are entirely mouse driven. On-line help makes them easy to use. They are freely available by anonymous ftp at biom3.univ-lyon1.fr/pub/ mol_phylogeny or http:@acnuc.univ-lyon1.fr/, or by e-mail to galtier@biomserv.univ-lyon1.fr. SN - 0266-7061 UR - https://wwww.unboundmedicine.com/medline/citation/9021275/SEAVIEW_and_PHYLO_WIN:_two_graphic_tools_for_sequence_alignment_and_molecular_phylogeny L2 - https://www.lens.org/lens/search/patent/list?q=citation_id:9021275 DB - PRIME DP - Unbound Medicine ER -